Index

B

binomial_deviance_selection() (in module senid.preprocessing)

C

calculate_binomial_deviance_batch() (in module senid.preprocessing) calculate_interaction_scores_for_lr_pair() (in module senid.extrinsic)

calculate_ligand_enrichment() (in module senid.extrinsic) constrain_senchat_interactions() (in module senid.extrinsic)

G

generate_loom_objects() (in module senid.intrinsic)

get_monod_de_genes() (in module senid.intrinsic)

I

infer_consensus_modules() (in module senid.extrinsic)

infer_spatial_communication() (in module senid.spatial)

M

module senid senid.extrinsic senid.intrinsic senid.plotting senid.preprocessing senid.spatial senid.tools

P

prepare_files_for_inference() (in module senid.intrinsic)

process_monod_fits() (in module senid.intrinsic)

R

run_cnmf() (in module senid.extrinsic)

run_monod_inference() (in module senid.intrinsic)

S

score_marker_genes() (in module senid.tools) senchat() (in module senid.extrinsic) senid module senid.extrinsic module senid.intrinsic module senid.plotting module

senid.preprocessing module senid.spatial module senid.tools module subset_for_communication() (in module senid.extrinsic) subset_for_spatial_sasp_communication() (in module senid.spatial)